Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance to gene:79 nt. Distance to run of Ts=0 nt. Size=23 nt. Delta G=-14.90 kcal/mol
Antiterminator: Size=69 nt. Delta G=-14.12 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -7.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGGCAAGATAAAGAGCGATGCGTAAGTTGTTTTCAGAAGCAATTGAAACAGAGTCAA
GATACTTGCGAGCGATTAACTAGAGCATTATGTAATGCTAAAAATCAGTGTGCTGAAT
TAGAGAAAGAATTGGCTTGTGTTAAAGCTAAGAAGAAGTAAgaaggttatccattattttagtagttttt
ttttgaaaagccctcctttattcggagggcttttttgggtttaaattggaatcttttaatcttgtttagtttgcacattgcagggaatcaaggttttgcg
aataaaaatttcgtTTG
TC0499
Gene: TC0499 GI: 15835117 BI number: TC0499 GOG: NOG12195 Description: hypothetical protei
ga
t a
ta
ta
t g
t |
t |
tc
tc
tc
gt
ac
tc
ta gt
t t a t
gc t t
gc t |
a a t |
a | ta
g | a
At t
At t
Ta a
Gt c
At c
At |
Gt | a
A a | t t
A g t t t
G | a t c
A | t cg
At t cg
Ta g ta
Cg g cg
Gt a cg
At a cg
At g gc
At A at
tttttgggtttaaattggaatcttttaatcttgtttagtttgcacattgcagggaatcaaggttttgcgaataaaaatttcgtTTG
..................................................................................................................