Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance to gene:44 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-21.30 kcal/mol
Antiterminator: Size=72 nt. Delta G= -9.75 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G= -9.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTTCTCCTGGACTGCTAATGGCTGCCAAGTCCCAACCTCAGCACATACAATAGCGAAC
CAACTAATCCTTCGCTATAAAGCCTGCTCCCTATACGTAAATGCAGTAGCTACCAAAC
TAGAAAGCACATATCTCTCAAGCAGCTTATCTTGCGGAGGCTATGTTGGTTTCTAAtc
tgaccttagggatgcacaatttttaaaacctccacatcttcatggtaaattaggcaaggaataccttgcctaatttacttttctgatttatctaacgcct
attaagatcgtacgtattcaataggtTTG
pmpB/C
Gene: pmpB/C-1 GI: 15835309 BI number: TC0694 GOG: NOG43380 Description: polymorphic membrane protein B/C famil
ta
t a
t a
t a
t c
a c
a t
c c
a c
c a
gc
ta
at
gc
T gt
T T gt
GC a c
GT t a
TA t t
TA cg
Gt cg
T c at at
At | a a a
Tg | a gc
C a | a gc
Gc | t at
Gc gt at
At ta cg
Gt cg gc
G a tg gc
C | A c at
G | A a ta
Tg Ta ta
Tg Cg at
Cg Tg at
Ta Ta at
At Ta ta
Tg Gt gc
ttttctgatttatctaacgcctattaagatcgtacgtattcaataggtTTG
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