                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:183 nt.     Distance to run of Ts=0 nt.   Size=24 nt.     Delta G= -8.70 kcal/mol
Antiterminator: Size=41 nt.     Delta G=-10.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAATGAGTAAatccttttctaaaagcatttttcttaacaaaaaaccctcactcccatatactttgtcgtcgtaggaacatcgcttaccagatg
ggagggttactcctttcctctgttttcagacttaaatgattatGCCGGCGTGGCGGAATGGTAGACGCGGTAGACT
CAAAATCTACTCTTAGCAGTAAGGTGTTGGTTCGAGTCCAATCGCCGGCAttaatcgcctttc
attatttgtattgctaataattcgtaagagtcttttcttaaaagagaacgccaacccgatctcttgatATG

    TC0751 --- TC0752 Gene: TC0751     GI: 15835365     BI number: TC0751     GOG: NOG07060     Description: conserved hypothetical protein Gene: TC0752     GI: 15835366     BI number: TC0752     GOG: COG0642,COG2202     Description: sensor histidine kinas   a c  t a  c a  g gc gt at ta gc |  c        a |  a      t  c cg       t  t ta        gc gt        gc cg        gt tg        at g  g       gt ta        gc tg        gc tg       t  | cg        at at        gc             tgttttcagacttaaatgattatGCCGGCGTGGCGGAATGGTAGACGCGGTAGACTCAAAATCTACTCTTAGCAGTAAGGTGTTGGTTCGAGTCCAATCGCCGGCAttaatcgcctttcattatttgtattgctaataattcgtaagagtcttttcttaaaagagaacgccaacccgatctcttgatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [T] COG0642 Signal transduction histidine kinase ... can be seen here [T] COG2202 FOG: PAS/PAC domain ... can be seen here     ..................................................................................................................