                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:56 nt.    Distance to gene:14 nt.     Distance to run of Ts=2 nt.   Size=33 nt.     Delta G= -9.80 kcal/mol
Antiterminator:    Distance from promoter:34 nt. Size=42 nt.     Delta G=-14.90 kcal/mol
Anti-antiterminator:    Distance from promoter:22 nt.    Size=28 nt.     Delta G= -8.90 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgatc-tattct. It has a score value of 69.61 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgatcatttagcagaagcgaggtattcttctccctaaagttttctatGCACCAGTAGCTCAGTGGATAGAGTACCTG
GCTACGAACCAGGTGGTCAGAGGTTCAAATCCTCTCTGGTGCGttttttcttctgggaggagtaccA
TG

    TC0892 Gene: TC0892     GI: 15835506     BI number: TC0892     GOG: COG0450     Description: antioxidant, AhpC/Tsa famil             C           A  G           T  A           C  A        A            GC       C  A            GC       T  A            TA       T  T            CG        GC            CG        GC GG        AT        AT T  A       TG        GC G  T      G  G       AT A  A       AT       C  | CG        GC       T  | TA       |  A      G  | CG       |  G      G  | GT       |  A      T  | A  A      A  G      G  | T  C       TG        GC GC        AT        AT AT        GT        CG CG        GC        CG CG        TA        AT                         GCGttttttcttctgggaggagtaccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [O] COG0450 Peroxiredoxin ... can be seen here     ..................................................................................................................