Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance to gene:145 nt. Distance to run of Ts=1 nt. Size=24 nt. Delta G= -6.70 kcal/mol
Antiterminator: Size=77 nt. Delta G= -5.53 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-13.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAACGAGGTATTTTTAAGAAAGGTAAAGCTGATCGAGTAAAAGCTCGCGCTTCTGGA
CGCGCTTGCCCTACAGCTTAAattctctgttctttcctaattaaaattatatttggtccaaaaagcttgtgagcatgctcacttt
cgcagtttttttgggccattttattaaaaagttttttgcatcgatttaaaagcggcttgcttgtacaattttccccgaaatgcctcctttttggttataa
actttggttcccccaacattttaacgaaaagggtccttaatttttcggaggtttccaATG
TC0908
Gene: TC0908 GI: 15835522 BI number: TC0908 GOG: NOG09590 Description: conserved hypothetical protei
t
a t
a a
t a
c a
c a
t t
t t
t a
c t
t a
t t
TG g t
C G t t
T A c g
T C t g
CG c t
GC t c
CG t c
GC a a
C T A a
T T A a
CG Ta
GC Ta
A C Cg
A | Gc
A | At
A | C t
T | A | at
GC T | c g
AT C | gc
G A C | at
C | Cg gc
T | Gt ta
A | Tg gc
GC Ta | t
TA Cg | t
CG Gc t t
GC C a t c
AT Gt cg
AT Cg gc
agtttttttgggccattttattaaaaagttttttgcatcgatttaaaagcggcttgcttgtacaattttccccgaaatgcctcctttttggttataaactttggttcccccaacattttaacgaaaagggtccttaatttttcggaggtttccaATG
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