                                                                        Gene putatively regulated by attenuation in C_muridarum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:158 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-14.30 kcal/mol
Antiterminator: Size=60 nt.     Delta G=-16.84 kcal/mol
Anti-antiterminator:   Size=28 nt.     Delta G= -6.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

catttagaagacaacctgctttcattcagcaggtattggtcaacattgcttcgttgttctctggctacctctcttagtatttagaaagaggataacgatt
ctggagccaaaaaaattcttttttggctcttttttttctttttaatacgcatgattcttatagaagagttttcagtaataagttcttaatacgatgaaaa
gaaaaaagtagcttttttgccttctgggagaaagttgtaaaaaaaatattgttgggataggttcgcgaaaaatgaagctgtagagtttagagagctggcc
ATG

    TC0911 Gene: TC0911     GI: 15835525     BI number: TC0911     GOG: NOG44662     Description: conserved hypothetical protei            tt           c  a           t  g           c  t           t  a           c  t           c  t            at            ta            cg           g  a           g  a            ta            cg            ta            cg            tg            ta cg        gt t  t       ta        tt t  t       ta       a  c cg        gc        at gt        cg        at Gt        ta        at |  c      |  t       at |  t      |  t       at T  c      |  c       at At       |  t       cg cg       |  g       cg cg       |  g       gc gc        ta        at gt        cg        gc ta        gc        gt                         tttttttctttttaatacgcatgattcttatagaagagttttcagtaataagttcttaatacgatgaaaagaaaaaagtagcttttttgccttctgggagaaagttgtaaaaaaaatattgttgggataggttcgcgaaaaatgaagctgtagagtttagagagctggccATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_muridarum                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:165 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-14.30 kcal/mol Antiterminator: Size=60 nt.     Delta G=-16.84 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case catttagaagacaacctgctttcattcagcaggtattggtcaacattgcttcgttgttctctggctacctctcttagtatttagaaagaggataacgatt ctggagccaaaaaaattcttttttggctcttttttttctttttaatacgcatgattcttatagaagagttttcagtaataagttcttaatacgatgaaaa gaaaaaagtagcttttttgccttctgggagaaagttgtaaaaaaaatattgttgggataggttcgcgaaaaatgaagctgtagagtttagagagctggcc ATG     TC0911 Gene: TC0911     GI: 15835525     BI number: TC0911     GOG: NOG44662     Description: conserved hypothetical protei ac a  g t  a a  t g  t g  c a  t gg ag aa a  g g  c ac ta ta ta aa ta ga aa        tt tt       a  c tt        at cc        at t        at |         at |         at |         at |         cg |         cg |         gc c        at t        gc c        gt             tttttttctttttaatacgcatgattcttatagaagagttttcagtaataagttcttaatacgatgaaaagaaaaaagtagcttttttgccttctgggagaaagttgtaaaaaaaatattgttgggataggttcgcgaaaaatgaagctgtagagtttagagagctggccATG     ..................................................................................................................