Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance from promoter:56 nt. Distance to gene:4 nt. Distance to run of Ts=0 nt. Size=38 nt. Delta G=-10.90 kcal/mol
Antiterminator: Distance from promoter:55 nt. Size=21 nt. Delta G= -3.90 kcal/mol
Anti-antiterminator: Size=76 nt. Delta G=-20.30 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGATC-TATGCT. It has a score value of 71.62 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGATCCGGAAGAATATTCTGGATATGCTTTGGGAATGGGTATAGAGCGTCTTGCGAT
GCTTAAGTACGGAATTTCCGATATTCGATTGTTTAGCGAGAACGATTTGCGGTTTTTG
CGACAATTTTCTTAAGGA
_v18
Gene: _v18 GI: tRNA-Ser-1 BI number: tRNA-Ser-1 GOG: ------- Description: tRNA-Se
TG
T C
CG
TA
GT
CG
GC
AT
GT
| A
A A
TG
AT
TA
GC
| G
G G
G A
TA
AT
AT
GT TT
GC T G
GC A C
TG G G
TA CG
| T AT
| A AT
| T GT
| T AT
T C C GT
C G G G CG
G A A A GC
T T TG A |
AT TA T |
TG TA TG
AT GC TA
GT TG GC
GT TA TA
TA AT TA
CG GT AT
TTTCTTAAGGA
..................................................................................................................