Gene putatively regulated by attenuation in C_muridarum
Characteristics of the secondary structures
Terminator: Distance from promoter:71 nt. Distance to gene:5 nt. Distance to run of Ts=3 nt. Size=35 nt. Delta G=-13.80 kcal/mol
Antiterminator: Distance from promoter:38 nt. Size=49 nt. Delta G=-11.90 kcal/mol
Anti-antiterminator: Distance from promoter:34 nt. Size=34 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TAGAAA-tataaa. It has a score value of 68.27 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAGAAATAGAAGCAGAATAAtgatataaaggttgcaagttggtattctaacgccatggaatagcttctgactctggtgtttgttg
cacagggggaagccaagatgggctggagttagccgtgtctccagttctcttggctttttgtaagttaGCC
_v3
Gene: _v3 GI: tRNA-Thr-2 BI number: tRNA-Thr-2 GOG: ------- Description: tRNA-Th
aa
g g
gc
gc
g a
g a
a |
c |
a |
g c |
t t g | cc
t t tg g g
tg ta a t
gc g t t g
ta t g t t
g | tg gc
gc tg at
ta gc gc
cg t t gc
tg g | ta
cg g | cg
a | tg gt
g | cg gt
tg ta gc
cg cg t |
ta at at
ta gt gc
cg ta at
tggctttttgtaagttaGCC
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