                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:166 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G= -7.80 kcal/mol
Antiterminator: Size=44 nt.     Delta G= -9.20 kcal/mol
Anti-antiterminator:   Size=43 nt.     Delta G= -5.19 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CAGAAATTTTATGAGTCATataagtattcgcaatagtagttatttattcgctaatccaaaTCAAGAAATCGTATT
TTGACATCCTCCAGCGGCTGAAGTCAAGAGGGATTCCCCTATCTCTAATCCTTCTTTT
TCTCTATATAAAAGACTATTTAAAGAAAAAAACCTCTGCACAAAGGCATTAAAAAGTT
GCGTCTTTTCATACAATTGCACatgctgtagtgttgagagttttatctcttttttttctaactaaagtcttttcctagaaatat
agataacaaacagtcgagagaatttATG

    dcd --- CT038 Gene: dcd     GI: 15604757     BI number: CT039     GOG: COG0717     Description: Deoxycytidine triphosphate deaminase family protein Gene: CT038     GI: 15604756     BI number: CT038     GOG: NOG08092     Description: hypothetical protei             G   C       A  C T  G       CG A  T       CG A  A      T  C AT       C  T GT        CG AT        TA AT       A  A        A CG        CG       T  T TA        AT       C  C a  C       GC       C  T a  A       TA       C  C a  T       TA       C  T c  C       TG        TA c  C       TA        TA t  T      A  G       AT a  C      T  G       GC a  C      G  |       GC tA        CG        GT cG        TA        AT gC        AT        GC cG        AT        AT                         TTTTCTCTATATAAAAGACTATTTAAAGAAAAAAACCTCTGCACAAAGGCATTAAAAAGTTGCGTCTTTTCATACAATTGCACatgctgtagtgttgagagttttatctcttttttttctaactaaagtcttttcctagaaatatagataacaaacagtcgagagaatttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG0717 Deoxycytidine deaminase ... can be seen here     ..................................................................................................................