Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance to gene:40 nt. Distance to run of Ts=3 nt. Size=23 nt. Delta G=-10.90 kcal/mol
Antiterminator: Size=67 nt. Delta G=-12.40 kcal/mol
Anti-antiterminator: Size=64 nt. Delta G=-18.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TAAAGTTGCGAAACTCGTAGTTGCTCTCGCCGCTCTTGTTTTGAATGGGGCTTTGTGT
GTTCTTTCACTGGTTGCTTTATGTGTGGGAGCTACTCCTGTAGGGCCTTTAGCCGTTT
TAGTAGCGACAACACTGGCGAGCTTCTTGTGTGCAGCTTGTGTTTTGTTTATAGCTGC
TAAGGATCGGGGATGGATCGCTTCTACAAATAAGTGCTAGgcaaaactcgaaaagcagacttcctctagg
tctgctagctcttttaatgacaagaaacgaaatttgataaagggatagggggatacATG
CT118
Gene: CT118 GI: 15604837 BI number: CT118 GOG: NOG14008 Description: hypothetical protei
CA
T A A
T G T A
T T C T
T T TA
GT TA
TA CG
GT GT
T | CG
TA | C
CG | T
GC T A
AT A G
CG G g
GC Gc
| T Ta
| A | a
| A A a
| G G a
T G Gc
G A Gt
T T Gc
GC Cg
TG Ta
TG A a
CG G a t
TG G | c c
TA A | c t
| T A | ta
| G Ta tg
C G Cg cg
G A Gc at
AT Ta gc
GC Cg at
CG | a cg
GC Gc gc
GT At at
agctcttttaatgacaagaaacgaaatttgataaagggatagggggatacATG
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