                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:126 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G= -9.60 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -4.56 kcal/mol
Anti-antiterminator:   Size=52 nt.     Delta G= -4.27 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gtctgcgagattactatatctacaaccacaatgacatttgcggtcgaaagtatgattcctatccactaaggttttattgaaatccagttgataaagaagt
tttcctaatccaaccttgttgaaaacatcatagaaaagtggctcaagggtgcttttgagcgggatttttttgttttcgtatttttctgtccgcttttata
gttccttacgaaattttggtgattacgatttgtttttaacaggtaataacaaatacccgttccgaatccgattgttgctacaagagaaaattcctcacag
GTG

    CT165 --- CT166 --- CT167 Gene: CT165     GI: 15604884     BI number: CT165     GOG: -------     Description: hypothetical protein Gene: CT166     GI: 15604885     BI number: CT166     GOG: NOG05544     Description: hypothetical protein Gene: CT167     GI: 15604886     BI number: CT167     GOG: -------     Description: hypothetical protei at g  a t  a        a t  a      a  c g  g      a  a a  a       at c  a       gc c  g       ta        tg t  t      |  t      g  c at       t  a       gt at       g  g       gt at       t  a       at gc       t  a       at |  c      c  a       cg |  t      c  a       ta ta       a  g       cg ta        at        gc at        cg       |  g t  c       cg       |  g t  c      |  c      g  g ta       t  t       ta ta       a  c       gt gc       a  a       at gc        ta        at at        cg        at at        cg        at tg        tg        gt                         tgttttcgtatttttctgtccgcttttatagttccttacgaaattttggtgattacgatttgtttttaacaggtaataacaaatacccgttccgaatccgattgttgctacaagagaaaattcctcacagGTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_trachomatis                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:130 nt.     Distance to run of Ts=3 nt.   Size=20 nt.     Delta G= -7.50 kcal/mol Antiterminator: Size=47 nt.     Delta G= -4.56 kcal/mol Anti-antiterminator:   Size=52 nt.     Delta G= -4.27 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case gtctgcgagattactatatctacaaccacaatgacatttgcggtcgaaagtatgattcctatccactaaggttttattgaaatccagttgataaagaagt tttcctaatccaaccttgttgaaaacatcatagaaaagtggctcaagggtgcttttgagcgggatttttttgttttcgtatttttctgtccgcttttata gttccttacgaaattttggtgattacgatttgtttttaacaggtaataacaaatacccgttccgaatccgattgttgctacaagagaaaattcctcacag GTG     CT165 --- CT166 --- CT167 Gene: CT165     GI: 15604884     BI number: CT165     GOG: -------     Description: hypothetical protein Gene: CT166     GI: 15604885     BI number: CT166     GOG: NOG05544     Description: hypothetical protein Gene: CT167     GI: 15604886     BI number: CT167     GOG: -------     Description: hypothetical protei at g  a t  a        a t  a      a  c g  g      a  a a  a       at c  a       gc c  g       ta t  t      |  t at       t  a at       g  g at       t  a gc       t  a |  c      c  a |  t      c  a ta       a  g ta        at at        cg        tg t  c       cg       g  c t  c      |  c       gt ta       t  t       gt ta       a  c       at gc       a  a       at gc        ta        cg at        cg        ta at        cg        cg tg        tg        gc                         gggatttttttgttttcgtatttttctgtccgcttttatagttccttacgaaattttggtgattacgatttgtttttaacaggtaataacaaatacccgttccgaatccgattgttgctacaagagaaaattcctcacagGTG     ..................................................................................................................