Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance from promoter:45 nt. Distance to gene:117 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G=-13.30 kcal/mol
Antiterminator: Distance from promoter:13 nt. Size=51 nt. Delta G= -3.47 kcal/mol
Nomenclature/Definitions
The most likely promoter is: CTGATA-TAAAAT. It has a score value of 60.91 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTGATAAGCGCTGCTTCTTTTATCTAAAATTAGATAAACGAAAACAGAAACACCGCCA
TCCTTTTGGATAAcaaaaaaaaccaaactagtttgtccaaccagtttggttttttttcttatcgaagcctctttctactagaaaacTTA
TTCTTCAACATCTTGAATTAAATCTTCAACATACTGCTGAGGAAGAGGCTCTCTATTC
TCTCCCTTCCCTAAATAGCTTGTGGCAAATG
CT352
Gene: CT352 GI: 15605075 BI number: CT352 GOG: ------- Description: hypothetical protei
T
A A
G A
Gc
Ta
Ta
Ta
Ta t
C a g c
C a t c
T a ta
A a ta
C c gc
C c a c
G a ta
C a cg
C a at
A c at
C t at
A a cg
A g cg
At at
Gt at
At at
Cg at
At at
tttcttatcgaagcctctttctactagaaaacTTATTCTTCAACATCTTGAATTAAATCTTCAACATACTGCTGAGGAAGAGGCTCTCTATTCTCTCCCTTCCCTAAATAGCTTGTGGCAAATG
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