                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:75 nt.    Distance to gene:80 nt.     Distance to run of Ts=3 nt.   Size=37 nt.     Delta G=-17.70 kcal/mol
Antiterminator:    Distance from promoter:73 nt. Size=20 nt.     Delta G= -4.10 kcal/mol
Anti-antiterminator:    Distance from promoter:20 nt.    Size=60 nt.     Delta G=-11.00 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: GTGGCT-TATATT. It has a score value of 66.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTGGCTCTTGCGGCTCTACTCGCTATATTTTTATTCTCTGCTAATAAAATCCATTTGT
AGagagagctttaagtgcccgtcgtttaattttcttatcttttcaaaaggaactggttctttttcaaagagaatcagttctttctattctttaaaatcc
tcttctcttatcctcaatagtaaagccgaatcaaacttctaaaaaatctttttttcagctcttaaggtatttttATG

    CT375 Gene: CT375     GI: 15605099     BI number: CT375     GOG: COG0665     Description: predicted D-Amino Acid Dehydrogenas   c c  g c  t gc tg gt at at ta ta t  t c  t gt at                   c gc                 t  a at                  ta gt                  ta |  a                 tg at                  ta Gc                  cg At                  ta |  t                 ta |  t       tg        gt T  t      c  g       gc Gc        at        ta Ta        at        cg Ta        gc        at Ta        gt        at A  a       at        gc Cg        at        gt Cg        at        at Ta        at        at                         ctattctttaaaatcctcttctcttatcctcaatagtaaagccgaatcaaacttctaaaaaatctttttttcagctcttaaggtatttttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_trachomatis                                                                         Characteristics of the secondary structures Terminator:    Distance from promoter:81 nt.    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=25 nt.     Delta G= -9.10 kcal/mol Antiterminator:    Distance from promoter:46 nt. Size=20 nt.     Delta G= -4.10 kcal/mol                                                                         Nomenclature/Definitions The most likely promoter is: GTGGCT-TATATT. It has a score value of 66.93 and is shown in blue Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GTGGCTCTTGCGGCTCTACTCGCTATATTTTTATTCTCTGCTAATAAAATCCATTTGT AGagagagctttaagtgcccgtcgtttaattttcttatcttttcaaaaggaactggttctttttcaaagagaatcagttctttctattctttaaaatcc tcttctcttatcctcaatagtaaagccgaatcaaacttctaaaaaatctttttttcagctcttaaggtatttttATG     CT375 Gene: CT375     GI: 15605099     BI number: CT375     GOG: COG0665     Description: predicted D-Amino Acid Dehydrogenas             c           t  a            ta ta        ta t  a       tg tt        ta gt        cg ct        ta tt        ta gc        gt ct        gc ct        ta ca        cg             ttctttctattctttaaaatcctcttctcttatcctcaatagtaaagccgaatcaaacttctaaaaaatctttttttcagctcttaaggtatttttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... can be seen here     ..................................................................................................................