Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance to gene:73 nt. Distance to run of Ts=2 nt. Size=25 nt. Delta G= -8.30 kcal/mol
Antiterminator: Size=75 nt. Delta G=-22.40 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-11.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGGCTTTTTATGAGCATAAATTTGCATTTCAAGGGTTTTGCTGGGGAATCAATTCTT
TTGACCAAGAAGGGGTTTCATTAGGGAAAGAATTGGCAACGCAAATTATAGGCATCAT
GTCGGGGAATGCTCCTGTAGAGTTTTCCGAAGCTCGAGGTATGTTAAGACTTTTTAAC
GTTTTAACATAAagtgctttctacggagacggctaggcaaagtttttttgtttgcagagtttttattttaaatatgttataatctgtctat
tacttctctcttaaaatcgtttttttaggggctttATG
ltuA
Gene: ltuA GI: 15605101 BI number: CT377 GOG: NOG09484 Description: hypothetical protei
TT
T A
T A
T C
CG
AT
GT
AT
AT
TA
TA
GC
TA
AT
TA
G G A
T T G a
C A A g
CG G t
TA C |
CG T |
GT Cg
T T Gc
AT At
AT At
GC G |
GC C |
| G C |
| A T |
| A T |
| G T | ag
| C T | g a
GT G | gc
GC At cg
CG Gc a g
TA At t c
G G Ta c t
TG Gc t |
AT T | ta
C | Cg tg
TA Cg cg
AT Ta gc
CG Cg ta
aagtttttttgtttgcagagtttttattttaaatatgttataatctgtctattacttctctcttaaaatcgtttttttaggggctttATG
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