                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:206 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-14.40 kcal/mol
Antiterminator: Size=25 nt.     Delta G= -5.10 kcal/mol
Anti-antiterminator:   Size=48 nt.     Delta G=-12.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TGAGTTCTCCTCTTCTAATGAGGGTGAAGAGGATATCCTTCCTCAAAATGGTTAGagat
cttttaacgaagagggttttctctcttcgttttctttaaggtttaagcgtcttttctgtggtttcaaaaaatgtttagtgtaacatagggagtgcttaac
cgccttcaggtgagtgtacagattttcatgttattaaaccctcaaaaggcattttttatctgtaaaagccagttgataatcttcttctcatattgagtta
acagaatactaaagccttcgagttcagaaataaggagattcATG

    sucB_2 --- yrbH Gene: sucB_2     GI: 15605125     BI number: CT400     GOG: COG0508     Description: Dihydrolipoamide Succinyltransferase Gene: yrbH     GI: 15605124     BI number: CT399     GOG: COG0517,COG0794     Description: GutQ/KpsF Family Sugar-P Isomeras TA A  T GC GC AT GT A  | A  | G  | T  | G  | GC GC AT GC TA         c        tt |  A      a  g      t  t |  A      a  a       gc A  A       ta        gt AT        tg        gc TG        ta        at CG        tg        gc |  T       cg        at T  T       tg        at TA        at        gc CG        gt        cg Ta        at        at Cg        Gt        at                         ttctttaaggtttaagcgtcttttctgtggtttcaaaaaatgtttagtgtaacatagggagtgcttaaccgccttcaggtgagtgtacagattttcatgttattaaaccctcaaaaggcattttttatctgtaaaagccagttgataatcttcttctcatattgagttaacagaatactaaagccttcgagttcagaaataaggagattcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0508 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes ... can be seen here [R] COG0517 FOG: CBS domain ... can be seen here [M] COG0794 Predicted sugar phosphate isomerase involved in capsule formation ... can be seen here     ..................................................................................................................