Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance from promoter:48 nt. Distance to gene:168 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-19.40 kcal/mol
Antiterminator: Distance from promoter:16 nt. Size=43 nt. Delta G= -7.50 kcal/mol
Anti-antiterminator: Size=77 nt. Delta G=-12.37 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgctt-tacaat. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgcttttttttagaactttaacatacaatccattgtagcttttccagtcgtgcgtgctagaacttcttgtaaagctgtggcgaggactctttagggtcc
tcgtcgtttttGCTCAGATGGTGGAATGGTAGACACTAGGGACTTAAAATCCCTTGGGCTTT
GGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCAcatcttttttctctggttcttgagacaataatacctttttgatt
tatagatgaggagagctatttaactcggggtatctttttgATG
CT503
Gene: CT503 GI: 15605232 BI number: CT503 GOG: NOG06347 Description: hypothetical protei
cc
t a
at
at
cg
at
ta
| g
a c
c t
a t
a t
t t
t c
t c
c a
a g
at c
gc t t
a g t t
t t cg
t g at
t c a a
t g g a
t t a |
t | ta
t | cg
t | gc tt
cg | t t a
gc | g cg
t t t t tg
t a g g cg
a | cg at
cg gc gc
ta tg gc
ta | a at
gc g g gc
at cg cg
at ta gt
gc gc gc
At at tg
tttttGCTCAGATGGTGGAATGGTAGACACTAGGGACTTAAAATCCCTTGGGCTTTGGCCCGTGCAAGTTCGAGTCTTGTTCTGAGCAcatcttttttctctggttcttgagacaataatacctttttgatttatagatgaggagagctatttaactcggggtatctttttgATG
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