                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:130 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G= -6.00 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -8.90 kcal/mol
Anti-antiterminator:   Size=40 nt.     Delta G=-13.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGAGAGAAACGTCGAGAGAGTCGGTTACGAGCATTGATGGGTACCCGAGGAATAGAGG
GATGTGGGCAGGCTCATAATTGTGTGCAAGTATGTCCTAAAAAGTTGCCTTTAACAGA
AAGCATTTCAGCTATGGGATGTGAGGTTTCCCGTTTTTCTTTGCGAGCATTATTTTCC
TCGTTATTCAAGAAAAAAACAGAGGAATAAcagagagttttttggagatagggactcttaagtttcgaagattgcatc
gcaattttattccatggtaaagggagagaaaaaactcctttcttcgtcATG

    CT590 Gene: CT590     GI: 15605319     BI number: CT590     GOG: NOG04998     Description: hypothetical protei             C           A  A           A  G            TA            TA            TA            CG TA       |  C A  A      |  A C  T      |  T T  T      |  T CG       C  T GT        GC G  G       TA AT        TG CG        GC GC        AT |  A      A  A        A |  A      A  |      G  G G  G      A  |      T  G GT        AT       G  T TA        TG       T  T GT        CG        AT TG        CG        GC AT        TA        GC GC        GT        GC GC        TG        TG GT        AT        AT                         TTTTCTTTGCGAGCATTATTTTCCTCGTTATTCAAGAAAAAAACAGAGGAATAAcagagagttttttggagatagggactcttaagtttcgaagattgcatcgcaattttattccatggtaaagggagagaaaaaactcctttcttcgtcATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_trachomatis                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:144 nt.     Distance to run of Ts=0 nt.   Size=21 nt.     Delta G= -6.00 kcal/mol Antiterminator: Size=49 nt.     Delta G= -8.90 kcal/mol Anti-antiterminator:   Size=40 nt.     Delta G=-13.30 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GGAGAGAAACGTCGAGAGAGTCGGTTACGAGCATTGATGGGTACCCGAGGAATAGAGG GATGTGGGCAGGCTCATAATTGTGTGCAAGTATGTCCTAAAAAGTTGCCTTTAACAGA AAGCATTTCAGCTATGGGATGTGAGGTTTCCCGTTTTTCTTTGCGAGCATTATTTTCC TCGTTATTCAAGAAAAAAACAGAGGAATAAcagagagttttttggagatagggactcttaagtttcgaagattgcatc gcaattttattccatggtaaagggagagaaaaaactcctttcttcgtcATG     CT590 Gene: CT590     GI: 15605319     BI number: CT590     GOG: NOG04998     Description: hypothetical protei             C           A  A           A  G            TA            TA            TA            CG CA       |  C T  T      |  A C  A      |  T G  A      |  T GT       C  T AT        GC C  G       TA GT        TG GG        GC GT        AT |  G      A  A        A |  C      A  |      G  G T  A      A  |      T  G GA        AT       G  T TG        TG       T  T AT        CG        AT GA        CG        GC GT        TA        GC GG        GT        GC AT        TG        TG GC        AT        AT                         TTTTCTTTGCGAGCATTATTTTCCTCGTTATTCAAGAAAAAAACAGAGGAATAAcagagagttttttggagatagggactcttaagtttcgaagattgcatcgcaattttattccatggtaaagggagagaaaaaactcctttcttcgtcATG     ..................................................................................................................