Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance to gene:210 nt. Distance to run of Ts=2 nt. Size=35 nt. Delta G=-19.50 kcal/mol
Antiterminator: Size=30 nt. Delta G= -7.41 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -6.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TATGAATCTTATTTCTTTCCAATACTGGAAAGGGCATCAGTCTATCCTAAGAAACTAG
ctgtaagctagtctcttaggacatctttttctcttaagaatagaactgtatttttagaaaaaatccttcctgagctatagtttttggcttggttacgatc
atgcttatgtaagtaagagatttgtaaccgtttgcgaaaaaatcaagcgtcccaggaagagagatttccgtgagcacttctcaataataaaatacaaacc
atgggtcggttgtatgagatgtcaaactttgctaaggacattATG
CT623
Gene: CT623 GI: 15605354 BI number: CT623 GOG: NOG10320 Description: CHLPN 76kDa Homolo
at
g g
at
gc
ta
a a
ta
gc t
| t t A t
| t a T g a
t t cG t a
tg aT cg
gc gC Gc
gt gC At
| a aT Ta
| a | A Cg
| g | A At
cg | G A c
ta | A At
gc | A Gc
| a | A At
gt | C At
gt aT Ta
tA tA Cg
aT cG Cg
cG gc Ta
catctttttctcttaagaatagaactgtatttttagaaaaaatccttcctgagctatagtttttggcttggttacgatcatgcttatgtaagtaagagatttgtaaccgtttgcgaaaaaatcaagcgtcccaggaagagagatttccgtgagcacttctcaataataaaatacaaaccatgggtcggttgtatgagatgtcaaactttgctaaggacattATG
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