                                                                        Gene putatively regulated by attenuation in C_trachomatis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:135 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G= -9.70 kcal/mol
Antiterminator: Size=28 nt.     Delta G= -6.60 kcal/mol
Anti-antiterminator:   Size=72 nt.     Delta G= -9.87 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CATaaagttgtacacttatcgaaagtttccacccccctagaagaagattcgtagagatatttattagtttcttcttctttaaggggtgtggaaattgt
ttataacattgttatttcgagagaaaaagctgtgaaaataatgttcataactttgttcacagcttgtttaaattgtttagaacaaaaggttatgcctatt
tgtaaacaggtggtcatcaagtttttcaacaagctttttgctgaaaaactttgagtgttttgttatgtgtggtaggctaatctgctttataggagttttc
ttATG

    CT632 Gene: CT632     GI: 15605363     BI number: CT632     GOG: COG1351     Description: hypothetical protei   t t  a t  a cg tg tg cg |  t |  g t  t tg cg ta ta ta gt at tg |  t |  t |  t |  a |  t |  a                  a |  a                c  t |  c                 ta t  a                 ta a  t                 gc t  t       ag       t  t t  g      g  a      a  t t  t       cg       a  t at        ta       t  g ta        ta       a  | at        ta       a  | gt       a  a       at at        ta        at gc        tg        gc a  g       gc        ta t  a      t  t       gc g  |       tg        ta cg        at        cg ta        cg        gc                         ttgtttaaattgtttagaacaaaaggttatgcctatttgtaaacaggtggtcatcaagtttttcaacaagctttttgctgaaaaactttgagtgttttgttatgtgtggtaggctaatctgctttataggagttttcttATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [F] COG1351 Predicted alternative thymidylate synthase ... can be seen here     ..................................................................................................................