Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G= -7.00 kcal/mol
Antiterminator: Size=41 nt. Delta G= -7.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTCTACAGATAGTAAACTAGGATATGAGGCGAATACTGGATTGCGATTGATCTTTTAA
tggattggaagagctaacagcaaccattctatccctaatctcccatcagagattagggattttttttactctgaaatggagtgaattagaaatgtgatta
tattttttttattagctagtcaacaagttgaggagaagatagaatttttctctttttttcgctaggaaacaaaatttgtgcagaaataggtctgaggctg
ttttttggtccatctgcatgacgatcatttaaaggagattcgATG
CT813
Gene: CT813 GI: 15605547 BI number: CT813 GOG: NOG12656 Description: hypothetical protei
ca
t a
g c
a a
ta
cg
gt
at
tg
ta
a | ga
tg a a
tg t t
ta at
tg gt
ta at
ta at
tg gc
ta at
at gc
ta gt
ttttttcgctaggaaacaaaatttgtgcagaaataggtctgaggctgttttttggtccatctgcatgacgatcatttaaaggagattcgATG
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