Gene putatively regulated by attenuation in C_trachomatis
Characteristics of the secondary structures
Terminator: Distance to gene:145 nt. Distance to run of Ts=1 nt. Size=39 nt. Delta G=-12.70 kcal/mol
Antiterminator: Size=39 nt. Delta G= -7.00 kcal/mol
Anti-antiterminator: Size=53 nt. Delta G= -7.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTATACAGCAGGCACAGGGGGAAGTATTCTCATCATTGGATCCGCTGCAGGTGTTGCC
TACATGGGAATGGAAAAAGTGAGTTTCGGCTGGTATGTCAAACACGCTTCTTGGATTG
CTTTAGCCAGTTATTTTGGAGGTCTAGCAGTCTATTTTCTAATGGAAAATTGTGTGAG
TTTGTTCGTCTGAggtagtcgaaaagtatggcagagtttctttaaaaattcttttaataaaagggttctctgcctattctagacccctttt
tgaatggaaaaatgggtttttggagaacatcgattATG
CT858
Gene: CT858 GI: 15605594 BI number: CT858 GOG: NOG05144 Description: predicted Protease containing IRBP and DHR domain
GT
A G
A A
A G
AT
AT
GT
GC G A
TG C C T T
| G A T T T
A C C T GT
A T A C AT
G G AT CG
G G AT CG
GT CG | A
TA TG | G
AT G A G G
CG T T A T
AT AT T C
T C TG T T
C A GC TA
C | GT CG
G | | T GC
TA | T TA
TA TA TG
GC CG AT
TA GC GC
GC GC GT
ATTTTCTAATGGAAAATTGTGTGAGTTTGTTCGTCTGAggtagtcgaaaagtatggcagagtttctttaaaaattcttttaataaaagggttctctgcctattctagacccctttttgaatggaaaaatgggtttttggagaacatcgattATG
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