Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance from promoter:163 nt. Distance to gene:37 nt. Distance to run of Ts=1 nt. Size=30 nt. Delta G= -7.50 kcal/mol
Antiterminator: Distance from promoter:102 nt. Size=71 nt. Delta G=-10.10 kcal/mol
Anti-antiterminator: Distance from promoter:82 nt. Size=53 nt. Delta G=-10.80 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttcaga-taacat. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttcagaatacatattttctttcgtaacatcttatgaaaggaaataacctaggaatctccatagttgtagcgcagttcttcggaaggtttttgatgggttt
tttaccgcattgtaagggtgatcaaagataattcttgatagtttttattttaaaacattcttactaataagaagcatttaatttaaaatagcggaatagg
aacattttctttgttttattccatattttttttaaaatgtccacttttaactcccatatttgcagcagatATG
CCA00180
Gene: CCA00180 GI: 29839947 BI number: CCA00180 GOG: NOG39222 Description: conserved hypothetical protei
ta
c a
at
ta
ta
cg
ta
ta
a g
c c
ga a a
t t at
ta at
cg at
| t ta
t t ta
t t t t
at t t
at at
ta ta
at ta
gt ta t
at ta t c
at | t t t
a a | a t t
c a tg at
t a gc cg
a a | g at
gc a g at
ta t a g |
gt a a gt
gt gt at
gc ta ta
at tg at
at cg at
ta ta gc
gc ta gc
atattttttttaaaatgtccacttttaactcccatatttgcagcagatATG
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