                                                                        Gene putatively regulated by attenuation in C_caviae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:138 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-22.00 kcal/mol
Antiterminator: Size=65 nt.     Delta G=-14.49 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -5.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCTCCTGGAGATGCCCGCGGAGAAGCTATTCTTTCTTCAGATACTTTAACAGTACCTG
TAGCAGATACGGAAAACACACACGTTTATTAAtcttttaaaattctttaaaagatcttaaacgaaaaagccgtcct
agattgcatctagggcggttttttttgtttcagacttcttgaaattctttggaattttttgaagagccctcttgataaaatctaaaaaaattaaattaaa
aattttaattaaataatggagttggttaaactctttcgtcttacgtttttagagaaggagtttaacATG

    srp Gene: srp     GI: 29839953     BI number: CCA00186     GOG: NOG08722     Description: Sr            tt           a  c            at            at            at            ta            ta            ta            ta            cg   A        ta T  A       At T  C      A  c TA       T  t CG       T  | AT        At TA        Ta         g A  C       Ta       t  c GC        Ta        ta AT        Gc        at CG        Cg        gc |  T      A  a       at |  A      C  a       ta |  G      A  a       cg T  C      C  a       cg TA       A  a       tg CG       C  g       gc TA       A  |       cg |  T      A  |       cg |  A      A  |       gt T  C      A  |       at TG        Gc        at CG        Gc        at TA        Cg        at TA        At        at                         ttgtttcagacttcttgaaattctttggaattttttgaagagccctcttgataaaatctaaaaaaattaaattaaaaattttaattaaataatggagttggttaaactctttcgtcttacgtttttagagaaggagtttaacATG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in C_caviae                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:145 nt.     Distance to run of Ts=0 nt.   Size=23 nt.     Delta G=-12.50 kcal/mol Antiterminator: Size=65 nt.     Delta G=-14.49 kcal/mol Anti-antiterminator:   Size=41 nt.     Delta G=-11.00 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case GCTCCTGGAGATGCCCGCGGAGAAGCTATTCTTTCTTCAGATACTTTAACAGTACCTG TAGCAGATACGGAAAACACACACGTTTATTAAtcttttaaaattctttaaaagatcttaaacgaaaaagccgtcct agattgcatctagggcggttttttttgtttcagacttcttgaaattctttggaattttttgaagagccctcttgataaaatctaaaaaaattaaattaaa aattttaattaaataatggagttggttaaactctttcgtcttacgtttttagagaaggagtttaacATG     srp Gene: srp     GI: 29839953     BI number: CCA00186     GOG: NOG08722     Description: Sr            gc           a  c            ag            at            ac            ac            gt            ca            ag            aa            at            tt           t  g           c  c tt       t  | a  c       aa at        g at        a at        a ta        a ta        a ta       t ta       t cg       t          g ta       c        t  c At       t         ta A  c      t         at T  t      a  |       gc T  |      a  |       at At       a  |       ta Ta       a  |       cg Ta        t        cg Ta        t        tg Gc        t        gc Cg        t        cg                         gttttttttgtttcagacttcttgaaattctttggaattttttgaagagccctcttgataaaatctaaaaaaattaaattaaaaattttaattaaataatggagttggttaaactctttcgtcttacgtttttagagaaggagtttaacATG     ..................................................................................................................