Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance to gene:189 nt. Distance to run of Ts=1 nt. Size=28 nt. Delta G= -7.10 kcal/mol
Antiterminator: Size=55 nt. Delta G=-10.10 kcal/mol
Anti-antiterminator: Size=32 nt. Delta G= -6.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCTAATTTTGAAAAATTATTGTTTCTTTGCATtgcgcttttttcgttggtcgtggttgttagacatcttaaaaaag
gtcctgctttttgcatatacctttctgtttttttctaaagcgaacgctttacgttagctaggatgccccggatcaacctaaccatcttctctgaagaagg
gttaagaattcttaatttttaatataaatacactatctttagcattttaattagggtttattttcaaaataagttttataatttaattagttgaaaacat
aaaagattatttttaggtttaattATG
CCA00250
Gene: CCA00250 GI: 29840017 BI number: CCA00250 GOG: ------- Description: hypothetical protei
tt
g g
g t
t t
g a
cg
ta
gc
g a
t t
t c
t g t
t t c t
t t ta t
c t ta t t
gc ta t t
cg ta cg
gt ta gc
t t ta ta
T g cg | t
A | g | c a
Cg cg c t
Gt gt ta
Gc t c gc
Tg T c gc
At At at
tg Cg at
tg Gc at
ctgtttttttctaaagcgaacgctttacgttagctaggatgccccggatcaacctaaccatcttctctgaagaagggttaagaattcttaatttttaatataaatacactatctttagcattttaattagggtttattttcaaaataagttttataatttaattagttgaaaacataaaagattatttttaggtttaattATG
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