Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance to gene:128 nt. Distance to run of Ts=0 nt. Size=29 nt. Delta G= -7.60 kcal/mol
Antiterminator: Size=41 nt. Delta G= -5.40 kcal/mol
Anti-antiterminator: Size=25 nt. Delta G= -8.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGGGAAACAAAGGCTACCAACCTAGCTCGTCATGCATTTGTAGTTCGTGCTGCAAATA
ACTTTACCTATTCAGAACACATAGAGTTATTTGGACACGGTGGATTCGAACTTCGCGG
ATCTGCATATAGCTACAACTTCGATCTTGGTGGAAAAATCCTCTTCTAAgatttttgtagactc
cctgctgaatttacacagggagtcttctccttattttctacatcaatatacagcaactcttgctttattttctgatttttcttatgtcatgtagagccgc
aaaatatgcagggaatactaATG
CCA00281
Gene: CCA00281 GI: 29840048 BI number: CCA00281 GOG: ------- Description: polymorphic outer membrane protein G family protein/autotransporter, putativ
A
T T
A A
CG
GC
| T
| A
| C
| A
| A
| C AA
| T A A
| T AT
T T C GC
C T CG GC
A C TA | T
A G AT | C
GC GC | T
CG GT T T
TG | T GC
TA | G GT
AT CG TA
GC GT TA
GT CG Cg
TG TG Ta
GC TA At
ttttgtagactccctgctgaatttacacagggagtcttctccttattttctacatcaatatacagcaactcttgctttattttctgatttttcttatgtcatgtagagccgcaaaatatgcagggaatactaATG
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