Gene putatively regulated by attenuation in C_caviae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:180 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=49 nt.     Delta G= -8.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GAATAAATAAATCGGAAGGTAGGGAGCGATCGTCTGATTTTTCTTCGACTTCCTCAGA
TTCATCCAAGAGTTTTTCTACTTCTTCGGGATTCGGATCCAAGATCTGAGAGTCGTTA
TTTATTGTAGAGTCCACaattgtccttatactaaaatcatcggatacatttatctaagttgctctgataacttattgatgacagcact
ttcaacaataaagatcctcttttcggtatattacaaaataatcgaaataagtgcacctatacaactactagagaaatagcagagcctgaaataagaATG


    CCA00320


Gene: CCA00320     GI: 29840085     BI number: CCA00320     GOG: -------     Description: hypothetical protei


 TT
T  C
T  T
 TA
 GC
|  T
 AT
 GC
 AT
|  T
|  C
A  G
 CG         A
 CG       C  A
 TA        CG
 AT        TA
|  T       AT
|  C       GC
 CG        GT
 TG        CG
 TA        TA
 AT        TG
 GC       A  A
A  C      G  G
C  A       GT
 TA        GC
 CG        CG
            TTATTTATTGTAGAGTCCACaattgtccttatactaaaatcatcggatacatttatctaagttgctctgataacttattgatgacagcactttcaacaataaagatcctcttttcggtatattacaaaataatcgaaataagtgcacctatacaactactagagaaatagcagagcctgaaataagaATG
    ..................................................................................................................