Gene putatively regulated by attenuation in C_caviae

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:108 nt.    Distance to gene:121 nt.     Distance to run of Ts=0 nt.   Size=23 nt.     Delta G= -8.60 kcal/mol
Antiterminator:    Distance from promoter:80 nt. Size=41 nt.     Delta G= -3.60 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: ttgata-tcaatt. It has a score value of 67.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ttgataattatgacaattttgatcaattttctagttggggagacatggctcaagctccctttgcgataagagagttaacggtcattcaatcaaagtaata
atatttttagattaaagaaattttttcctcagaaagggcaagtctgtctgagatttgtcttgtttgcgttctgaaattaaattctaaatctttaatctga
ctaattattatttagttttgttattttttttgattaaaagttttttagttgttatagtttatctattcgattctaatttgaattATG

    CCA00321


Gene: CCA00321     GI: 29840086     BI number: CCA00321     GOG: COG1214     Description: conserved hypothetical protei


 tc
c  a
 cg
 ta
 ta
 ta
 tg
 tg
 tg
|  c
|  a
a  a        c
a  g      t  t
 at       g  g
 gc        ta
 at        cg
a  |       ta
a  |       gt
t  |       at
 tg        at
 at        cg
 gc        gt
 at        gc
            ttgtttgcgttctgaaattaaattctaaatctttaatctgactaattattatttagttttgttattttttttgattaaaagttttttagttgttatagtttatctattcgattctaatttgaattATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[O] COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone ... can be seen here

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