Gene putatively regulated by attenuation in C_caviae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:108 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=41 nt.     Delta G= -4.50 kcal/mol
Anti-antiterminator:   Size=23 nt.     Delta G= -3.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttattgcgcctgaatgcaaaacagcaagactcttctgtgttcctagttttcttaatatcgggattttaagaggtataggagatttaactcctttcctta
taccaggatcgctacacatctgattctaaaaactttaagaaaactttgtgtttttatatgagtatgtgcgaaaacgtacttgtttattttttctccagaa
aattatggaaacaaactccatcttaaataaagagaaaaaatcgccctaggcacaagcgtagcccactttatcattaattttaaaagaaggtaattctctt
ATG

    CCA00336


Gene: CCA00336     GI: 29840100     BI number: CCA00336     GOG: -------     Description: hypothetical protei


           aa
          a  a
           gc
           at
           at
          t  t
          t  g
          t  t
           cg
           at        ga
  a        at       c  a
c  c       at       g  a
a  a       at        ta
t  t       at        gc
c  c       ta        tg
 gt       |  t       at
 cg       |  a       ta
 ta       |  t       gc
 at        cg        at
 gt        ta        gt
 gc        tg        tg
 at        at        at
                        ttattttttctccagaaaattatggaaacaaactccatcttaaataaagagaaaaaatcgccctaggcacaagcgtagcccactttatcattaattttaaaagaaggtaattctcttATG
    ..................................................................................................................