Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance to gene:118 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-20.00 kcal/mol
Antiterminator: Size=36 nt. Delta G= -8.80 kcal/mol
Anti-antiterminator: Size=27 nt. Delta G= -5.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTACCATGGTCGTTACAGTTATAGCTATGATCGTTGGAGCTATTATTATTGCCAATGC
ATCTGATTCTACCCCAGCTAATGGTGGAACAAATCCTACCCCACCGACTCCTTAGaatc
tctacttagagtccttgctctagtatgaaagagacagaaccttaaggggttctgtctttttttttatgtcgataagccctacttcaaacaagatttgttg
gtttttgcgttaatttatattaattaattagagtcaaacaattatcatataattaaatcgttttatttattttacttattattATG
CCA00351
Gene: CCA00351 GI: 29840115 BI number: CCA00351 GOG: NOG08326 Description: conserved hypothetical protei
ct
c t
tg
gc
at aa
gc t g
t at tg
a c t | cg
a t ta cg
Gc cg at
At at at
Ta | a gc
| c | t at
| t | g cg
T t | a at
C a | a gc
Cg ta at
Ta cg gt
Cg ta at
At cg at
Gc ta at
ttttatgtcgataagccctacttcaaacaagatttgttggtttttgcgttaatttatattaattaattagagtcaaacaattatcatataattaaatcgttttatttattttacttattattATG
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