Gene putatively regulated by attenuation in C_caviae

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:175 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-10.30 kcal/mol
Antiterminator: Size=72 nt.     Delta G= -6.90 kcal/mol
Anti-antiterminator:   Size=50 nt.     Delta G= -6.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTGAGTTATGGAATGCGTACGTAGAAGCTGTAAGAACTAATTCTTCAAACTTGGATTC
TCCTCAGTCTTTCGTTTAAaaaaaaccttacaatcggctaagtcaaataaatattttagccgatttttccctagtctctagagagc
tttaggagagcttctggtttctcccttccttttttcttgtcaatagagaaaaaaattggtatgttagaagactaaaaaactaaaaattaactgttttaaa
gacaaaactattaataacttataaattataaaactaagctatttcagagggtaaatATG

    tlc


Gene: tlc-2     GI: 29840197     BI number: CCA00435     GOG: COG3202     Description: ADP, ATP carrier protei


           CC
          T  T
          C  C
           TA
           TG
           AT
           GC
           GT
          |  T
          T  T
          T  C
           CG
           AT
           AT
 AG        AT
A  A      C  A
 TA       T  A
 GC       T  a
T  T      C  a
C  A      T  a
G  A      T  a
 AT       A  a
 AT       A  a
 GC       T  c
 AT       C  |
|  T      A  |       ta
|  C      A  |      a  a
T  A       Gc       a  a
G  A       At       a  t
C  A       At       c  a
A  C       Ta       t  t
T  T       Gc        gt
 GT       |  a       at
 CG       |  a       at
G  G      |  t       ta
 TA       |  c       cg
 AT        Tg        gc
 AT        Cg        gc
 GC        Gc        cg
 GT        At        ta
                        tttttccctagtctctagagagctttaggagagcttctggtttctcccttccttttttcttgtcaatagagaaaaaaattggtatgttagaagactaaaaaactaaaaattaactgttttaaagacaaaactattaataacttataaattataaaactaagctatttcagagggtaaatATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[C] COG3202 ATP/ADP translocase ... can be seen here

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