Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance to gene:158 nt. Distance to run of Ts=2 nt. Size=27 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=12 nt. Delta G= -3.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gagattattgagagtcgttggcttccatagatgttcttagctgaggaagttcaatgtatgattactagggactaagcatgtagaggttagcagggagttt
actaaggacgagagttcgagtctctccacctccatttttcttcaattattagacgctgtcttaaaacttaagcctttctttttcaagaagatgaagtaat
ttcttgaaaggcacgctaatttcaatcaacatctatcgaaaaacttatttttgcagtatagttttcctctaaatcacacaatgacaagcttgagtaaagt
ATG
CCA00665
Gene: CCA00665 GI: 29840423 BI number: CCA00665 GOG: NOG09581 Description: conserved hypothetical protei
g
c a
t g
t t
gc
at
gc
at
ag gc
g a c c
cg a a
at gc
gt gc
gc at
ccatttttcttcaattattagacgctgtcttaaaacttaagcctttctttttcaagaagatgaagtaatttcttgaaaggcacgctaatttcaatcaacatctatcgaaaaacttatttttgcagtatagttttcctctaaatcacacaatgacaagcttgagtaaagtATG
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