Gene putatively regulated by attenuation in C_caviae
Characteristics of the secondary structures
Terminator: Distance to gene:174 nt. Distance to run of Ts=3 nt. Size=31 nt. Delta G= -8.80 kcal/mol
Antiterminator: Size=28 nt. Delta G= -4.60 kcal/mol
Anti-antiterminator: Size=44 nt. Delta G= -6.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTTCTTCTCTGGAAAGATCGGGAGGAGGAGGAATACATTCCCACGAAGATTTTTTTAC
ACGCTCATGAATAGTAGGTAAGGGAGGTTCTTCATTATCCTGGGTTGGAGGGGGAGAA
GAATTTGTTAATTTTTTATCTATAGTGGCAGGTTGAGGAATACTTATTGGTTTGGAAA
TCGGGGAAGGTTTTGCAGGGGGGAGCTTGCTTATTTCTTCTTTGAGGCTTAAAGGGAT
AAGTTTTGCTAATGGTGGATAATACGGCTCTAAATAGCGATCAATGATTTCTTGTAAA
ATCAAAGAGATTG
CCA00843
Gene: CCA00843 GI: 29840600 BI number: CCA00843 GOG: ------- Description: hypothetical protei
G
T A
A A
C T
TA
CG
GT
C A GG
A G T G T
CG G T T T
AT GC CG
TA AT CG
TA GT TA
TG GC A G
TG G A T G
TG AT T G
TA AT A |
TG TA CG
A G | T TG
G | GC TA
AT GC CG
AT AT TA
GC TG TA
GAATTTGTTAATTTTTTATCTATAGTGGCAGGTTGAGGAATACTTATTGGTTTGGAAATCGGGGAAGGTTTTGCAGGGGGGAGCTTGCTTATTTCTTCTTTGAGGCTTAAAGGGATAAGTTTTGCTAATGGTGGATAATACGGCTCTAAATAGCGATCAATGATTTCTTGTAAAATCAAAGAGATTG
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