Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance from promoter:107 nt. Distance to gene:0 nt. Distance to run of Ts=0 nt. Size=30 nt. Delta G=-14.70 kcal/mol
Antiterminator: Distance from promoter:46 nt. Size=67 nt. Delta G= -5.43 kcal/mol
Anti-antiterminator: Distance from promoter:31 nt. Size=19 nt. Delta G= -5.40 kcal/mol
Nomenclature/Definitions
The most likely promoter is: GTGATG-TATCAT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTGATGTTGTTAAGGAAGGCGATATCATTGATGTAAAACTCTTAAGCATCAATGAAAA
AGGTCAACTTAAGTTGAGCCATAAAGCAACTCTAGAATAAtctttcacatacattctattctatacgctt
aacatgaaaagctagtcttcttagaaagactagctttttttATG
CP0856
Gene: CP0856 GI: 16752028 BI number: CP0856 GOG: ------- Description: hypothetical protei
c
a a
c t
t a
t c
t a
c t
t t
A c
At
Ta
At
At
Gc
At
Ta
C t
T a
C c
A |
A |
Cg
Gc
At ta
At t g
| a c a
| a ta
A c ta
TA Ta cg
T A At ta
CG Cg gc
AT | a at
AT | a ta
CG | a cg
TA | a gc
| G Cg at
GC Gc at
GC At at
ttttATG
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