Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance to gene:139 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G= -7.80 kcal/mol
Antiterminator: Size=57 nt. Delta G= -7.89 kcal/mol
Anti-antiterminator: Size=33 nt. Delta G= -5.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
taagtctacactataattaagggaatcccctttaagaagattttgggacctatctgtattcagagataggtccctctatgcacacATGTTCACG
AGTCTCGGGCGTAGCGCCATTTTCTACTTTACAGGTTCTCTAAAACATCTTCGTTTGG
GAGAATTTCTTGAGATTTTTCAAAAATAGaatcgccattttctatcaagtattcttctaagaaagcaatgtaagaaatg
ggaaaatgccctttaaaatatcctgtaatcttaaagctgtcaaaattaagagattaaaactgtgtcttaTTG
CP0299 --- CP0298
Gene: CP0299 GI: 16752586 BI number: CP0299 GOG: NOG05018 Description: polymorphic membrane protein G family
Gene: CP0298 GI: 16752585 BI number: CP0298 GOG: NOG05019 Description: polymorphic membrane protein H famil
A
T G
GC
CG
GC
GC
| A
| T
| T
| T
| T
| C
| T
| A
| C
| T
| T
| T
TC | A
T A | C
GC G A
TG CG
A A TG CT
cG C T T T
aT T T A C
| C GC CG
| T AT AT
| C GC AT
c G C T AT
a G A A A G
cG C A TG
gC TA CG
tG TA TA
aT GC CG
tA TA TA
cG AT TA
TTTCTTGAGATTTTTCAAAAATAGaatcgccattttctatcaagtattcttctaagaaagcaatgtaagaaatgggaaaatgccctttaaaatatcctgtaatcttaaagctgtcaaaattaagagattaaaactgtgtcttaTTG
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