Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance to gene:205 nt. Distance to run of Ts=1 nt. Size=35 nt. Delta G=-10.80 kcal/mol
Antiterminator: Size=29 nt. Delta G= -3.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAATCTTTTCCCCCCGTATGAGCCTCCACCCTCACGACCTCACACGCCCCCTCCATTT
GCTGATGAGTATGTCCCTCTCATAAGCGAGTCTTATTTCGACTAAaagttccaaataaaaataactt
aaagttttagttaaaaatctgttaagattttaacaaataaactttatttaataaaaaagttaagactcagaagaaaagagaactaactaaatcctattaa
atcttataatagtatgaaatatatcctatgaatgaaaattcatgggcctaatgataattacagtaagttgatagtATG
CP0310
Gene: CP0310 GI: 16752597 BI number: CP0310 GOG: NOG07244 Description: conserved hypothetical protei
T
G C
C T C
T C A C
C A T T
C T GC
C T AT
C T GC
CG TA
GC AT
C | G A
AT TA
CG CG
| A GC
AT TG
CG TA
TA TG
CG AT
CTTATTTCGACTAAaagttccaaataaaaataacttaaagttttagttaaaaatctgttaagattttaacaaataaactttatttaataaaaaagttaagactcagaagaaaagagaactaactaaatcctattaaatcttataatagtatgaaatatatcctatgaatgaaaattcatgggcctaatgataattacagtaagttgatagtATG
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