Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance to gene:175 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G= -7.50 kcal/mol
Antiterminator: Size=44 nt. Delta G= -6.20 kcal/mol
Anti-antiterminator: Size=49 nt. Delta G=-12.90 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATCTCTTTACTATATGGTACTGTTTCTATTTTTATAGAGCTGCAACTCCACAATCTG
ATCATCCTGACGGATGTGGCTTTATTCTACTAGAAAGGCTTAAGGAGCTCGGTGCAGG
GTTCTTTTATTGTGATCTTCGTGAGTCCAATACCACTGGCTTTACTCTTTTTTTTGAA
GGCTCCAATAAAGGTGTGTTAAAGAATCACTTGTTTATTAGAGATGAGTAAgcaagagctat
tcaaaaatacagtattatctgctatattttattttccttatcytttttagttagttaaaactccTTG
CP0616
Gene: CP0616 GI: 16752888 BI number: CP0616 GOG: ------- Description: hypothetical protei
C
T C
A T
CG
TA
A |
GC
TG AG
CG T A
TA C A
A | A A
A | TG
C | CG
A | T C
C | T T
C | AT
T | TA
C | TA
A | TG
AT CG
CG G A TG
G T G | G C
T G TG G A
CG GC CG
GC T | TG
AT AT CG
GT GC GT
AT G G AT
TA CG GC
AT AT GT
TTTATTGTGATCTTCGTGAGTCCAATACCACTGGCTTTACTCTTTTTTTTGAAGGCTCCAATAAAGGTGTGTTAAAGAATCACTTGTTTATTAGAGATGAGTAAgcaagagctattcaaaaatacagtattatctgctatattttattttccttatcytttttagttagttaaaactccTTG
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