Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance from promoter:104 nt. Distance to gene:88 nt. Distance to run of Ts=0 nt. Size=16 nt. Delta G= -6.90 kcal/mol
Antiterminator: Distance from promoter:79 nt. Size=35 nt. Delta G= -5.40 kcal/mol
Anti-antiterminator: Distance from promoter:49 nt. Size=45 nt. Delta G=-10.60 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgata-cATGCT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgatatcttcaagataaatcccATGCTCTCCTCTAACTCTCTAAGAAAAAATTCCTATAAACATAG
AATTCAAAAAAGAAGAATTGCCTTTCTATGTTTGTTTGAAAGTAGGCCTTCTTCTAGA
TCCAAAGATTCCCTATTGGGAATATTTTTCTGAaaacgatacaatcttgtataaggtagagagctatgctatgtgc
tttgaatctatcttaatgtacaactaactacataattttctATG
CP0690
Gene: CP0690 GI: 16752960 BI number: CP0690 GOG: NOG05811 Description: conserved hypothetical protei
T
T T
G G
T T
A T
T T
CG
TA A
TA G T
| A A C
| G T C
| T C A
TA TA
CG TA
CG CG
GC TA
T C T T
T | C T AT
AT C C T T
AT GC CG
GC GC CG
AT AT CG
AT TA TA
GC GT TA
AT AT AT
ATTTTTCTGAaaacgatacaatcttgtataaggtagagagctatgctatgtgctttgaatctatcttaatgtacaactaactacataattttctATG
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