Gene putatively regulated by attenuation in C_pneumoniae_AR39
Characteristics of the secondary structures
Terminator: Distance to gene:203 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -8.40 kcal/mol
Antiterminator: Size=60 nt. Delta G=-16.04 kcal/mol
Anti-antiterminator: Size=26 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGAGGCCCCAGAGGAGAAACCGAGTTTGCTGGATAAAGCGCGTTCTTTATTTACTCGC
GAGGACCATTCCTAGcataactccaagagttgtgtttctttaaaaattctttgaataaaatactatatgttagtagcttagtgggttta
acttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctctatcaccacagctacccccccccccccccagaccactctgtaggggctt
ttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggtGTG
CP0795 --- CP0794
Gene: CP0795 GI: 16753061 BI number: CP0795 GOG: ------- Description: hypothetical protein
Gene: CP0794 GI: 16753060 BI number: CP0794 GOG: ------- Description: hypothetical protei
A
T T
T T
T T
C A
T C
T T
GC
CG
GC
CG
| A
| G
| G
G A
A C
A C
A A
T T
AT
AT GC
G A GC
G A | T a
TA TA c a
CG CG cg
GC Gc ta
TG Ta cg
T C | t at
T G Ta at
GT Ta tg
AT Gc at
GC At cg
GT Gc Gt
ttctttaaaaattctttgaataaaatactatatgttagtagcttagtgggtttaacttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctctatcaccacagctacccccccccccccccagaccactctgtaggggcttttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggtGTG
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