                                                                        Gene putatively regulated by attenuation in C_pneumoniae_AR39

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:62 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-17.90 kcal/mol

                                                                        Nomenclature/Definitions

ATGTTCCTGCAGATAAAAAAATCGGCGTCTTAAAAGTCGTTAGGGAAGTAACTGGATT
AGCTTTAAAAGAAGCTAAAGAAATGACAGAAGGTTTACCTAAAACTGTTAAAGAAAAA
ACTTCTAAAAGTGATGCTGAAGATACTGTTAAGAAGTTACAAGATGCTGGCGCAAAAG
CCTCATTTAAGGGACTGTAAtttgtagaaaagaaaaatcgaaagatttttcttttctttttcttttcatgtataaaaaaccgaat
gctccctttagaagcatacgtaggcttaatttagggaaattTTG

    CP0694 --- CP0693 Gene: CP0694     GI: 16753076     BI number: CP0694     GOG: COG0085     Description: DNA-directed RNA polymerase, beta subunit Gene: CP0693     GI: 16752963     BI number: CP0693     GOG: COG0086     Description: DNA-directed RNA polymerase, beta` subuni           aa          g  a           cg           ta           at           at           at           at           at           gc           at           at           at           at           gc           at             ttttcttttcatgtataaaaaaccgaatgctccctttagaagcatacgtaggcttaatttagggaaattTTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit ... can be seen here [K] COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit ... can be seen here     ..................................................................................................................