Gene putatively regulated by attenuation in C_pneumoniae_CWL029
Characteristics of the secondary structures
Terminator: Distance to gene:130 nt. Distance to run of Ts=0 nt. Size=17 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=17 nt. Delta G= -3.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agctgaggatcttctttgtacctcttttgattcgaaaagaggtgctattgtgagttgccaatagcaacgatccaccttcgtttttgaaaagatacatcag
ttgctaagggaacttttcagaaaatatcataaaaaactcccaagattttggcttggaaagcgagcctttcttgctacttttgttacaacaaaagtgttct
attttaacgtgcgtatcatttgtgactaagagatagacttgctttctttatctatcttctgtattggaaagaaagccccttgagggaaaaaaaggttgtt
ATG
pmp_2
Gene: pmp_2 GI: 15617943 BI number: CPn0013 GOG: ------- Description: Polymorphic Outer Membrane Protein G Famil
t a
t t a a
t g g g
a g gc
gc tg
at ta
at cg
cg gc
cg gc
tttcttgctacttttgttacaacaaaagtgttctattttaacgtgcgtatcatttgtgactaagagatagacttgctttctttatctatcttctgtattggaaagaaagccccttgagggaaaaaaaggttgttATG
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