Gene putatively regulated by attenuation in C_pneumoniae_CWL029

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:206 nt.     Distance to run of Ts=3 nt.   Size=27 nt.     Delta G= -7.30 kcal/mol
Antiterminator: Size=12 nt.     Delta G= -3.60 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G= -5.80 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GTCCAATGTAAACAATTCTAGAAGATAAGCATGTAGAGGTTAGCAGGGAGTTTGTCAA
GGACGAGAGTTCGAGTCTCTCCACCTccattatttaaaaaaattattttaaaatgctactcatcccctcttaacgaggaga
atctgtcttttttaccaaatttagacaatgtcttcctaaagtctttaaagaaatcaaatatccattaaaaaacccttctagatttcatagaaatagaaaa
gaaagataagttgttttataattcttaatgaaaaaatttatttcattataaggcgattcttATG

    CPn0108


Gene: CPn0108     GI: 15618032     BI number: CPn0108     GOG: NOG09581     Description: similarity to CT01


 GG
A  T
G  T
A  A
 TG
 GC
 TA
|  G
|  G
|  G
A  A
 CG
 GT                   G
 AT                 C  A
 AT                 T  G
 TG                 T  T
 AT                  GC
 GC                  AT
A  A                 GC
A  |                 AT
G  |       AG        GC
A  |      G  A      C  C
 TA        CG       A  A
 CG        AT        GC
 TG        GT        GC
 TA        GC        AT
                        ccattatttaaaaaaattattttaaaatgctactcatcccctcttaacgaggagaatctgtcttttttaccaaatttagacaatgtcttcctaaagtctttaaagaaatcaaatatccattaaaaaacccttctagatttcatagaaatagaaaagaaagataagttgttttataattcttaatgaaaaaatttatttcattataaggcgattcttATG
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