Gene putatively regulated by attenuation in C_pneumoniae_CWL029
Characteristics of the secondary structures
Terminator: Distance to gene:138 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-11.30 kcal/mol
Antiterminator: Size=49 nt. Delta G= -8.10 kcal/mol
Anti-antiterminator: Size=48 nt. Delta G= -4.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ATTCCAAGCAACATACCAAGTCATTCGTAAAACAAGCGAAGTTGCTAGCTAAGAATAT
CTCACACGAACTTCAAGATTTTAAAAAGGGAATCCTCGACGACAAAGATTAGagttgctat
taagaagctctgtatgattgagatatcttctcagggctttttttcatttaaaagcacataaatagaggctctctccgagaaatgccattctcgagtcaac
tttttatttccgtgtatttatttttctgttctatgtaagtttagatctgtataaggctataacttattaggactccgacatATG
pmp_19
Gene: pmp_19 GI: 15618450 BI number: CPn0539 GOG: NOG05020 Description: polymorphic membrane protein A Famil
tt
a a
ta
AT cg
A C g a
GC ta
GT tg
GC gc
A G at
A A Gc ag
A C At g a
A G Tg t t
A A T t ta
T C A a at
TA G | gc
TA A | | t
TA A | t t
A G At a c
G A Cg t t
AT A a gc
AT G | ta
C A C | cg
T G At tg
Ta Gt cg
Cg Cg gc
At Ta at
At Cg at
tttttcatttaaaagcacataaatagaggctctctccgagaaatgccattctcgagtcaactttttatttccgtgtatttatttttctgttctatgtaagtttagatctgtataaggctataacttattaggactccgacatATG
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