Gene putatively regulated by attenuation in C_pneumoniae_CWL029
Characteristics of the secondary structures
Terminator: Distance to gene:200 nt. Distance to run of Ts=0 nt. Size=21 nt. Delta G= -8.40 kcal/mol
Antiterminator: Size=60 nt. Delta G=-14.42 kcal/mol
Anti-antiterminator: Size=26 nt. Delta G= -6.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCCTGAGGCCCCAGAGGAGAAACCGAGTTTGCTGGATAAAGCGCGTTCTTTATTTACT
CGCGAGGACCATACCTAGcataactccaagagttgtgtttctttaaaaattctttgaataaaatactatatgttagtagcttagtgg
gtttaacttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctctatcaccacagctaccccccccccccagaccactctgtaggggc
ttttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggtGTG
CPn1055 --- CPn1056
Gene: CPn1055 GI: 15618963 BI number: CPn1055 GOG: ------- Description: hypothetical protein
Gene: CPn1056 GI: 15618964 BI number: CPn1056 GOG: ------- Description: hypothetical protei
A
T T
T T
T T
C A
T C
T T
GC
CG
GC
CG
| A
| G
| G
| A
G C
A C
A A
AT
TA
AT A C
G A GC
G A GT a
TA TA c a
CG CG cg
GC Gc ta
TG Ta cg
T C | t at
T G Ta at
GT Ta tg
AT Gc at
GC At cg
GT Gc Gt
ttctttaaaaattctttgaataaaatactatatgttagtagcttagtgggtttaacttatgtgtttgagcatgatggcgccacagattcataatgcaagtacctctatcaccacagctaccccccccccccagaccactctgtaggggcttttttttgtctgtctaaatttcgtgttttagcaatcacttttttagttcttggtGTG
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