Gene putatively regulated by attenuation in C_pneumoniae_J138
Characteristics of the secondary structures
Terminator: Distance to gene:161 nt. Distance to run of Ts=2 nt. Size=23 nt. Delta G= -6.40 kcal/mol
Antiterminator: Size=78 nt. Delta G= -7.25 kcal/mol
Anti-antiterminator: Size=37 nt. Delta G= -9.49 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCCATAGAATACGGGGCTCTAGATGGAAAACCTGTAGGCATTCTTTTCTTCCTTTTTG
CTTGCCAGGATAAAAGTCACTTAAACTTAGTAAATAAAATAGTCCATCTCGGGATGTC
TTTAAATGCCCGAAGCTTTTTTAAAAATTATCCTAACAAAGATCAACTTTTAGCGTAC
GTTAAGGAATGGGAGTCCCAAACTCATTAAtagctagagtttaaaaagatttttaagtccaagttgtgaaaaaaatcc
ttttgttgctatggtgatcctcataggcttccaggagattgtagtcgcATG
CPj0062
Gene: CPj0062 GI: 15835598 BI number: CPj0062 GOG: NOG07056 Description: CT289 hypothetical protei
TC
G A
A C
A T
A T
A A
T A
A A
GC
GT
AT
C A
CG
GT
TA
TA
C A
GT
TA
TA
TA
CT TA
T T | T
T C TA
T C CG
T T | T
C T C C
T T T C
T T T A TT
AT C T C T
CG T C T A
GC T T G A
GT T C TA
AT TG AT
TG CG | G
| C TG GC
GC TA GC
TA AT GC
CG CG CG
CG GT TA
AGCTTTTTTAAAAATTATCCTAACAAAGATCAACTTTTAGCGTACGTTAAGGAATGGGAGTCCCAAACTCATTAAtagctagagtttaaaaagatttttaagtccaagttgtgaaaaaaatccttttgttgctatggtgatcctcataggcttccaggagattgtagtcgcATG
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