                                                                        Gene putatively regulated by attenuation in C_pneumoniae_J138

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:92 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-17.90 kcal/mol

                                                                        Nomenclature/Definitions

TAAAAGTCGTTAGGGAAGTAACTGGATTAGCTTTAAAAGAAGCTAAAGAAATGACAGA
AGGTTTACCTAAAACTGTTAAAGAAAAAACTTCTAAAAGTGATGCTGAAGATACTGTT
AAGAAGTTACAAGATGCTGGCGCAAAAGCCTCATTTAAGGGACTGTAAtttgtagaaaagaaaa
atcgaaagatttttcttttctttttcttttcatgtataaaaaaccgaatgctccctttagaagcatacgtaggcttaatttagggaaattttgtcgcatc
aaaatagcaggagaactcgcATG

    rpoB --- rpoC Gene: rpoB     GI: 15835616     BI number: CPj0081     GOG: COG0085     Description: RNA polymerase beta Gene: rpoC     GI: 15835617     BI number: CPj0082     GOG: COG0086     Description: RNA polymerase beta           aa          g  a           cg           ta           at           at           at           at           at           gc           at           at           at           at           gc           at             ttttcttttcatgtataaaaaaccgaatgctccctttagaagcatacgtaggcttaatttagggaaattttgtcgcatcaaaatagcaggagaactcgcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit ... can be seen here [K] COG0086 DNA-directed RNA polymerase, beta' subunit/160 kD subunit ... can be seen here     ..................................................................................................................