Gene putatively regulated by attenuation in C_pneumoniae_J138
Characteristics of the secondary structures
Terminator: Distance to gene:206 nt. Distance to run of Ts=3 nt. Size=27 nt. Delta G= -7.30 kcal/mol
Antiterminator: Size=12 nt. Delta G= -3.60 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -5.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gtccaatgtaaacaattctagaagataagcatgtagaggttagcagggagtttgtcaaggacgagagttcgagtctctccacctccattatttaaaaaaa
ttattttaaaatgctactcatcccctcttaacgaggagaatctgtcttttttaccaaatttagacaatgtcttcctaaagtctttaaagaaatcaaatat
ccattaaaaaacccttctagatttcatagaaatagaaaagaaagataagttgttttataattcttaatgaaaaaatttatttcattataaggcgattctt
ATG
CPj0108
Gene: CPj0108 GI: 15835644 BI number: CPj0108 GOG: NOG09581 Description:
gg
a t
g t
a a
tg
gc
ta
| g
| g
| g
a a
cg
gt g
at c a
at t g
tg t t
at gc
gc at
a a gc
a | at
g | ag gc
a | g a c c
ta cg a a
cg at gc
tg gt gc
ta gc at
ccattatttaaaaaaattattttaaaatgctactcatcccctcttaacgaggagaatctgtcttttttaccaaatttagacaatgtcttcctaaagtctttaaagaaatcaaatatccattaaaaaacccttctagatttcatagaaatagaaaagaaagataagttgttttataattcttaatgaaaaaatttatttcattataaggcgattcttATG
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