                                                                        Gene putatively regulated by attenuation in C_pneumoniae_J138

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:165 nt.     Distance to run of Ts=0 nt.   Size=33 nt.     Delta G=-16.40 kcal/mol
Antiterminator: Size=40 nt.     Delta G= -6.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTACAGTACAATCGGATACTAATCGTTTAAGATACTTTATTATATCTCCTGCTTATCA
AGTGGGATCAACTGCTATTATAAATTGGTAAtaactatagataggggtttttctaagctagaaagacctctattttt
atattcatggaccaataacaagtagtttctaataattaaaaatattttaaacaactacatcgtaattagagggggaagggttagaatttttattccaatt
aaaactaaaaatctttaaaatattgttctttatatcaattttctcagaaaccaacggttattcttATG

    CPj0242 Gene: CPj0242     GI: 15835777     BI number: CPj0242     GOG: -------     Description: hypothetical protei At A  a Ta Gc Gt Ta         g T  t      a  c A  a       at A  |       ta A  |       cg T  |       ta A  |       ta Tg        ta Ta        tg At        ta Ta        gc Cg        gc G  g       gt Tg        gc Cg        at At        ta At        at             ttttatattcatggaccaataacaagtagtttctaataattaaaaatattttaaacaactacatcgtaattagagggggaagggttagaatttttattccaattaaaactaaaaatctttaaaatattgttctttatatcaattttctcagaaaccaacggttattcttATG     ..................................................................................................................