Gene putatively regulated by attenuation in C_pneumoniae_J138
Characteristics of the secondary structures
Terminator: Distance from promoter:148 nt. Distance to gene:3 nt. Distance to run of Ts=0 nt. Size=36 nt. Delta G=-12.20 kcal/mol
Antiterminator: Distance from promoter:115 nt. Size=50 nt. Delta G= -8.52 kcal/mol
Anti-antiterminator: Distance from promoter:78 nt. Size=59 nt. Delta G=-13.35 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TTGGCT-GATGAT. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGGCTTACTTTTTCAAATAAAAGATGATTTTTCAGATTTACAAAAAGACTCCCAACA
AATTGGGCTAAATTATGCTTTACTATTTGGAGAAAAGGCCGCTCTAGAGCTATTAGCA
AGATCTCAAAACAATTGCTTAGAGCTCTTGGATCGTCTCAGTGCTGGTGGATTAAAGA
ATAGTTCTGAATTCGAAACGATTATCTCGAGTTTAGGATCTTTTTAAATC
CPj0747B
Gene: CPj0747B GI: 15836280 BI number: CPj0747B GOG: ------- Description: CT631 hypothetical protei
A
T G
T A
CG
GC T
T T T A
T C A A
AT G A
AT G G
CG T A
A G G A
A A GT
A T TA AT
A C CG G T
C G GT C A
T T T T A T
C C GC A C
T T AT AT
A C CG GC
G A TA CG
A G | A TA
AT C T TG
CG T T AT
GC GC AT
AT CG GT
TG TA TA
TG A A CG
AT G A TG
TG GC TA
CG TG GT
CTTTTTAAATC
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