Gene putatively regulated by attenuation in C_pneumoniae_J138
Characteristics of the secondary structures
Terminator: Distance to gene:31 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G= -6.30 kcal/mol
Antiterminator: Size=42 nt. Delta G= -7.70 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G= -4.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
gatcgagtcccggtgattgaagacggtttccgatagccactaggatcactgaggttccttcctctctgagataaaaactcatatttttcgtgtaaagact
aacaaatcagttttataggaatgcaaagattgtataaagatcgagcatcttggtcgctctactctacagtgaagcacgtgttttatcttgactgttagaa
aagaaaatatttccagaattgactcttttacacgtagttgaacttagttctaggggatctaggttttatttatatttaataaaacaaaaggaaaaataat
GTG
CPj0831
Gene: CPj0831 GI: 15836364 BI number: CPj0831 GOG: ------- Description: hypothetical protei
aa
a a
g t
a a
at
at
at
gc
a |
t |
t | ac
gc c g
ta at
cg ta
a a tg
g a t t
t t t t
t t cg
cg ta
ta | a g
| c c c a g
| t at t g
| c gt cg
a t ta ta
t t tg t t
t t at gc
t t at at
ta gc ta
gc at tg
ta | a cg
gc cg at
cg cg at
ttatttatatttaataaaacaaaaggaaaaataatGTG
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