                                                                        Gene putatively regulated by attenuation in C_pneumoniae_J138

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:211 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-16.60 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -9.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

ACCTTCCAAAGCACGCGGATTTAGAAAATAAttcgccttagcttgatttcgtttagagggtgggtaattttctactc
atcctcttttttatgcccaaatttttctctgtgctacctaggagttcttccttaaaaaggtagagatataattttccttcgtgataaaatttccattttg
cttttgatattctcaaacaacctttcaagtatctcatctagggattcgaaatgaaggtccttgtgaattgttgtctagttctcagattacctctctaaca
aaaactaagcttctatcttaactATG

    ygcA Gene: ygcA     GI: 15836418     BI number: CPj0885     GOG: COG2265     Description: rRNA methyltransfers tt a  t gc tg |  t t  t c  t g  a a  g       tt ta       t  t tg       a  c cg        at cg        ta gt        gc cg        gt tg        gc tg        ta At        gt A  a       gc Ta        gc At        at At        gc At        at             tttttatgcccaaatttttctctgtgctacctaggagttcttccttaaaaaggtagagatataattttccttcgtgataaaatttccattttgcttttgatattctcaaacaacctttcaagtatctcatctagggattcgaaatgaaggtccttgtgaattgttgtctagttctcagattacctctctaacaaaaactaagcttctatcttaactATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase ... can be seen here     ..................................................................................................................